rs49027036 SNP Detail

Summary

• ID
  rs49027036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46321757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCGTCCTT CCTCTCCTCT
  CAGTCCTTCC TCCACGCCTT CTCTCTCCTC CATGCATTCC TCTCCCCTTT CTCTTCAGAA
  AAGGGGAGGC CCGTGGACAT ACTTCTAATG TTTCAGTTAA CAGCCCCCAT GTCTGCTGGG
  CATGGGGCTG GGATGATGGC TCATCAGATA AGAGCACTTG CTGTTCTTGG GCCTGAGTTT
  R
  GTTTCCAGCC CCGACATCAG GCAGTTCACA GCCAGCTGTA ACTCATGCAC CAGAGAATCT
  GACACCCTCT TCTGGCCTCT CTTGAAACCT TGGCTTGCAC TCGTGCACGC ACGCACAAAC
  ACACACAGAG CAATTTGGGA TTCACTATAT TGCTCAGACT GGCCTTGAGT GACCAGGCAA
  GACTGCTTTA GTCTCTCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss149177906	ENSMUSSNP2392581	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49027036					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46321757 () rs orientation: forward

Symbol	Name	Function Class
Tph1	tryptophan hydroxylase 1	within coordinates
Tssr72530	transcription start site region 72530	22 bp upstream
Tssr72531	transcription start site region 72531	51 bp downstream
Tssr72532	transcription start site region 72532	166 bp downstream
Tssr72533	transcription start site region 72533	178 bp downstream
Tssr72534	transcription start site region 72534	194 bp downstream
Tssr72535	transcription start site region 72535	221 bp downstream