rs49027319 SNP Detail

Summary

• ID
  rs49027319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26808440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGATAATCA CCCACAGATA TACCTAGGCA CATCTAGATC
  TCATCAAGGT ACCTATTGAG CTTAACCCCT GCAGGTAGAT TTTGCTTTGT GGAAGCAAAC
  Y
  CAGGCCTCAC CCATGCTAGT CAAGTGCTCT GCCTTTGAGC TGCATCCCAC CCCTGAGAAT
  AGTTTTGAAA TTCTTCCTTC CGCAAAGAGG CATGAATCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137448333	ENSMUSSNP7239321	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss323954163	CHEV_12_27443306	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49027319					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26808440 () rs orientation: forward

Symbol	Name	Function Class
Rr259939	regulatory region 259939	1240 bp distal
Rr266884	regulatory region 266884	within coordinates