rs49027455 SNP Detail

Summary

• ID
  rs49027455
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:18012100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGATCACA CACTGCAGCA
  CTTGGGAAAG TGGACCCTTC ACCTTGCCTG GGCAGCATAG TAGACCTGAC CCTGCATGTG
  GGAGCTGCAG GTGAGCTGCC CCCAACAGTA TAAGCACAGG AGCCTGTTCT GCCTCTTGTC
  TCTTGGAATG TGGCTCAGAC TCTGCCTCTT GCCCGCTGGG ATGTGGTAAA GACAGCCCCT
  T
  CCTTTCCTCA TGCCTTCATA TCTATGCCAG GTGGGAGAGC TTGCCCTGTG GTCATGAGAG
  TGGGAGAACT GGCCATATCA TTCACCAACT TCAAAACTTG GGACAGCTGG CCCTGCGCCT
  TGCCTAGCCA CAGGGTAGAG CTGGCCTTGT TTGTGGTGGT TGCAAATGAG CCAGCCCTGT
  GTGTGTGGAA AGTAAGAGAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147966738	ENSMUSSNP5817119	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49027455					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:18012100 () rs orientation: forward

Symbol	Name	Function Class
Cd36	CD36 molecule	Intron
Tssr50155	transcription start site region 50155	1027 bp upstream
Tssr50156	transcription start site region 50156	896 bp upstream
Tssr50157	transcription start site region 50157	829 bp upstream
Tssr50158	transcription start site region 50158	679 bp upstream
Tssr50159	transcription start site region 50159	784 bp downstream
Tssr50160	transcription start site region 50160	1278 bp downstream