rs49027604 SNP Detail

Summary

• ID
  rs49027604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117839074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGAAAAA CTCACATAAA
  GTGGAAGGGA AAAACTCCTC AGGAGGAGTG AGGCAGAAGG AGGATCATGA GCCCAAGGCA
  AATATTGGTA ACTTCCGTAG GAGTTCGTCT CAAAAGTGCT GAGGGGTGCT GCGAAGACCT
  AGCCCACAAA GTTAGACGAC ATCTGTGAAA GACTGTGTGG ACAGAATGAA GTCTCCAAAT
  R
  GTAGTTAGGG CTGTTATTGG GACGGTTTTT CAGGCAGGGT GAAGGAGAGA GAGTGAATAG
  GAGGGAGGAA CAGAGAACCT TGTTAACCCA CCCCCTCACG CCCCAGTCGT CTTCTGGCTG
  AAACCCTAGT TTATCCTGTG AACGCAAAGC TAATAATACT ATCCAATAAA CACGTGTGCT
  TAGAAATTAG TCTGGGGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss52224748	NES15323639	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs49027604					SNP	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52224748	NES15323639	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117839074 () rs orientation: forward

Symbol	Name	Function Class
Gm37852	predicted gene, 37852	1769 bp upstream
Igs80	intergenic site 80	714 bp distal
Rr226004	regulatory region 226004	within coordinates