rs49028179 SNP Detail

Summary

• ID
  rs49028179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110950333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCCCCT GGTGAGGAGA
  GAGACAAGAT GGTAGACTGA TAGATTTGAA AGCTCCAGCT GTTCTAGACC TTGTTCCCTA
  TCTCATGGCT TTTTGGTGGC AGGTGGCTTT CTTTATCATG GCACCAAACA GTCCTACCCT
  CAGCAGCTTA CCCTGTCCCC AAGGTCACGG TCGTGGCTTG AGCATGTCCC TTGAGGTTTA
  Y
  GTGTTGGAAA CCAAGTCCCC AGTGAGACTG TGTTGACAGG CGGGAAGATC CGGAGACGCC
  TGACCTCGGC AATGCGTTAA TGCTTTCTCT GGAGAGCATC CACCATCTGC CTCCCCCTCC
  TCCCAGCCCA GAGCTATCTG TATACCTCTG TTCCTTCAAG GTTCCTGCCC TCATTGCTCT
  GTGGTTGCAC TGAGCAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61718131	NES17662571	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49028179					SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61718131	NES17662571	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110950333 () rs orientation: forward

Symbol	Name	Function Class
Gm48630	predicted gene, 48630	1475 bp downstream
Gm51959	predicted gene, 51959	within coordinates
Gm60603	predicted gene, 60603	1475 bp downstream
Rr254698	regulatory region 254698	1268 bp proximal
Rr259298	regulatory region 259298	within coordinates
Tssr3954	transcription start site region 3954	1506 bp upstream