rs49028787 SNP Detail

Summary

• ID
  rs49028787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40553797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACACTGG CAGTAACTTT
  GGGCTTAACT TTAAGGTCTA TATTCAGATC TCTGAGGTTT GATAAGGACA CTCCCAACGC
  CCAGGCACTC TGAATGTACC TCAGCCTGAA TTAAACCATT ATCATGAACA ATGCCTGGTC
  TATCCGTTTC CCCTTCATCC TCAGTATTCC TCCTTTAATC CCATTTAGAT TTTGGATTAC
  Y
  GGGCTGTCCC TGTCACACCC TGGGAGTCTA AGCTCATGTG CCCTCATGTG CTTTCCTCTG
  AACCTGCAAT AGGTGGTAGG AAAACCTCAA ATCCTTTTGG GATTTGAGCT AGTTCCACAA
  TTAGCATGAA TACATGATTT TATTTATTTA TTTATCTATT TATTTATTGG CTTAGACCTG
  CCCTCAGTTG CTAACTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60721441	NES16360424	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	C	T
ss148982877	ENSMUSSNP546161	ENSEMBL	ENSEMBL_Sanger	f	SNP											C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49028787					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721441	NES16360424	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40553797 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	751 bp upstream
Rr410075	regulatory region 410075	277 bp proximal
Rr410076	regulatory region 410076	736 bp proximal
Tssr65	transcription start site region 65	858 bp upstream
Tssr6477	transcription start site region 6477	740 bp upstream
Tssr6478	transcription start site region 6478	805 bp upstream
Tssr6479	transcription start site region 6479	834 bp upstream
Tssr11438	transcription start site region 11438	578 bp downstream
Tssr11439	transcription start site region 11439	1810 bp downstream
Tssr11440	transcription start site region 11440	1820 bp downstream
Tssr11441	transcription start site region 11441	1838 bp downstream
Tssr11442	transcription start site region 11442	1854 bp downstream
Tssr11443	transcription start site region 11443	1885 bp downstream