rs49029810 SNP Detail

Summary

• ID
  rs49029810
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134295586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACACTTA CCAAAGTTGA
  ACTCCCTCAC TTTGCGCTTG CCAGCGTTGG CGGGCTCCGG GACGGGCGGG GGCGGGGGCG
  GCTCCGTGCT CTTTAGCCTC TTGGTGGGTG GAGAATAGTC ATCATCTTGA AAAAGAAAAC
  CTTTGTTACC GGGGGAACCA GCTGCTGGGT GTCAGCGTGG TTTGAGGGCA ACTCTAGCCA
  Y
  TCACGAGGAC TTCCTATGCT CCCTCGCTGC AGCTCCACGC TACACCACTG CCCGCTGCAC
  CGGCCAGGGC AGCTGCTCAT CCCCTCTGAC CAGTTTCTCC CCTAAGAATT TTCATGGCTA
  GAGTTATGCT CAACTTCAAG GGTTTGGAGG AAAAAGGTTT TACCGGAGGC AGCTACTTCA
  CTATAACAGT ACAAGCGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60846267	NES16011310	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49029810					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60846267	NES16011310	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134295586 () rs orientation: forward

Symbol	Name	Function Class
Gm43481	predicted gene 43481	333 bp downstream
Gtf2i	general transcription factor II I	within coordinates
Tssr53620	transcription start site region 53620	654 bp upstream
Tssr53621	transcription start site region 53621	114 bp upstream