rs49030022 SNP Detail

Summary

• ID
  rs49030022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:53615724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AAACAAACAA AACCACCAGG CTGGCCTTGA ACTCAGAAAT
  CCACCTGCCT CAGCCTCCCG AGTGCTGGGA TTAAAGGCGT CTGCCACCAC ACCCGGCTCA
  Y
  TTTTTTTTTT TTTTTTTTTT TGAGACCACA GAGATATCTG CCTGTCTCTG CCTCCCGAGT
  GATGGGATTA AAGGCTTGTC CTATCACACT CTGACTAGAA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136502088	ENSMUSSNP6048051	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49030022					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:53615724 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21758	CpG island 21758	1166 bp proximal
Rab39	RAB39, member RAS oncogene family	within coordinates
Rr401371	regulatory region 401371	1795 bp upstream
Rr679060	regulatory region 679060	1321 bp proximal
Rr679061	regulatory region 679061	1798 bp proximal
Tssr89614	transcription start site region 89614	1787 bp downstream