rs49030630 SNP Detail

Summary

• ID
  rs49030630
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134100891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAT TGGCAGAAGG TTCCCTTCCT
  G
  TAGGAAGCGG CTGAGACTCC TGAGT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147527514	ENSMUSSNP2437507	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321347235	CHEV_4_133929495	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49030630					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134100891 () rs orientation: forward

Symbol	Name	Function Class
Extl1	exostosin-like glycosyltransferase 1	998 bp upstream
Rr601652	regulatory region 601652	697 bp distal
Rr601653	regulatory region 601653	611 bp proximal
Tssr43895	transcription start site region 43895	1946 bp upstream
Tssr43896	transcription start site region 43896	1019 bp upstream
Tssr43897	transcription start site region 43897	991 bp upstream