rs49030901 SNP Detail

Summary

• ID
  rs49030901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18710452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAC TTCTGTAAGC CATCCTCTGG
  Y
  CTCCACATGT GTGTTGTCGT GTGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146149696	ENSMUSSNP684988	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325733604	CHEV_19_18807578	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49030901					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18710452 () rs orientation: forward

Symbol	Name	Function Class
Gm23238	predicted gene, 23238	184 bp downstream
Gm50202	predicted gene, 50202	within coordinates
Gm59201	predicted gene, 59201	1723 bp upstream
Rr544949	regulatory region 544949	1734 bp distal
Rr544950	regulatory region 544950	1633 bp distal
Rr544951	regulatory region 544951	162 bp distal
Tssr155457	transcription start site region 155457	1648 bp downstream
Tssr155458	transcription start site region 155458	345 bp downstream