rs49031328 SNP Detail

Summary

• ID
  rs49031328
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46039172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACACGGCC AAATAGAGGT
  GAAAGGCAGA TTGGCAAACT TAAACTCCTG TATTCTAAAA GAACCAGTAT TAATTTACAA
  CACTTTAGAA GTATAATATC ACTTTTCTCA TTAATGTATG TATTCATTTT ATATCCTGAT
  CACAGCCCCC CAGCCCCCTT CTAACCCTCA TAAGTTCCTC TTCCTATTAT CCCTTCCTCT
  T
  CTCCTAAGGG GAAGCCCCCC TTGTATACGG CCCTGCCCTG GGACACCAAG TAGAAGCAGG
  AATGTGTGTG TCCTCTCCCA TTGAGGTGCA ACCTGGCAGT TCAGCTAGAG GAAGGGGAGG
  GTTCCAATGG CAGGCAGCTC AGTCAGAGAT AGCCCTGACA TAGTTGTTAG GGGAGCCACA
  TGACGACAAA GCTGCACGTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136423322	ENSMUSSNP6448716	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49031328					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46039172 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	1148 bp distal
Rr678057	regulatory region 678057	190 bp distal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	637 bp downstream