rs49031425 SNP Detail

Summary

• ID
  rs49031425
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20060173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGTCAG CGGCACCGCT
  ACGTCCGAGC GGTCCAGCTG GTTCCATCGC CGGGCCAGGC AGCACAGCCG GCTGATGCAG
  GGCCACGCCA TGCCGCTCGG CCGCGCGCCT GCGCCGCGCG CGCGCACTAC CCCACTGCCC
  CCGCGCAACC CTGAGCCCCG CAAGGACGGC CTGCGGGCAG TCCTAAACCC AGAGTTCCCC
  S
  AATGTGAGCT CAGAAATCAG ACCTGGGCTT CATCGAGAGC GAGGTCGGAA GGAGGCATTT
  CCTCACCGTC ACTAAGCCTG CTACTTTTTT TTTTTTTTTT TTTAAGGAAC AATCAATCCA
  TCAAGAAGGC TCTGGCGGCA GGACCAGAGA ACTCTGTTGG CATTTGTGGA CACGGGTGGC
  TGCAAAATAG ATTTAAACTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52600694	NES15697967	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49031425					SNP	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52600694	NES15697967	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20060173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8068	CpG island 8068	within coordinates
Gm49566	predicted gene, 49566	within coordinates
Map6d1	MAP6 domain containing 1	65 bp upstream
Rr512839	regulatory region 512839	386 bp distal
Rr512840	regulatory region 512840	within coordinates
Tssr140349	transcription start site region 140349	149 bp upstream
Tssr140350	transcription start site region 140350	125 bp upstream
Tssr140351	transcription start site region 140351	60 bp upstream