rs49031741 SNP Detail

Summary

• ID
  rs49031741
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136722291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCCGCAAG AGAGTAGAAG GCACAGCCAG CTCCAATGTC
  TTTTCGATGT TCGATCAGTC CCAGATTCAG GAGTTTAAAG AGGTTGGTTG GTGGCCCTGG
  K
  GACCCTGGGG ACCCTGGGAG TCTATATTAG TTAGATTTCT TGTTGCTGCA ACAAAGTGCC
  TGACAAAAGC GATTTAAGGA AGGAAGGAGT CCCTAATTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss144517341	ENSMUSSNP5209279	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49031741					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136722291 () rs orientation: forward

Symbol	Name	Function Class
Gm71524	predicted gene, 71524	within coordinates
Myl10	myosin, light chain 10, regulatory	within coordinates
Tssr49256	transcription start site region 49256	1908 bp downstream
Tssr49257	transcription start site region 49257	600 bp downstream
Tssr49258	transcription start site region 49258	467 bp downstream
Tssr49259	transcription start site region 49259	407 bp downstream
Tssr49260	transcription start site region 49260	333 bp downstream
Tssr49261	transcription start site region 49261	159 bp upstream
Tssr49262	transcription start site region 49262	177 bp upstream
Tssr49263	transcription start site region 49263	220 bp upstream
Tssr49264	transcription start site region 49264	230 bp upstream
Tssr49265	transcription start site region 49265	684 bp upstream
Tssr49266	transcription start site region 49266	706 bp upstream
Tssr49267	transcription start site region 49267	776 bp upstream
Tssr49268	transcription start site region 49268	1754 bp upstream
Tssr49269	transcription start site region 49269	1767 bp upstream
Tssr49270	transcription start site region 49270	1778 bp upstream
Tssr49271	transcription start site region 49271	1803 bp upstream