rs49034060 SNP Detail

Summary

• ID
  rs49034060
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70168782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGGTTCAA TTACAGATTT AAGATAATTC CCACAAAATG
  CTAAAAAGTT CTTATCAGGT ACATAAAAGA CATTGCTGAA TTTTATATGT AAAATACTTT
  W
  AAAAAAACAC ACAAAATGGT TAGCACAATG TAGACGAACC CACAACACAC TCGTAACATT
  TCCAATCAAA TACACAAGAC AACACACTGT TTAGGAAGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss145111266	ENSMUSSNP4036696	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322696645	CHEV_8_72240031	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49034060					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70168782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20415	CpG island 20415	246 bp proximal
Gm51532	predicted gene, 51532	1020 bp upstream
Gm64048	predicted gene, 64048	426 bp upstream
Rr186712	regulatory region 186712	within coordinates
Rr400882	regulatory region 400882	208 bp upstream
Rr400883	regulatory region 400883	733 bp upstream
Tssr77669	transcription start site region 77669	448 bp upstream
Tssr81531	transcription start site region 81531	283 bp downstream
Tssr81532	transcription start site region 81532	305 bp downstream
Tssr81533	transcription start site region 81533	695 bp downstream
Tssr81534	transcription start site region 81534	718 bp downstream
Zfp869	zinc finger protein 869	within coordinates