rs49034296 SNP Detail

Summary

• ID
  rs49034296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:127343256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACAGCCT GTCTCTAACT
  CTAGTGTCCC CCTCTCTAGC CTCTGGCAGC CATGATGGAG GAGGAGCCAG AGTCAGCCAG
  GCCAGAGGAG GGCAAGTCAC AGGATGGTGA GTGTCACTCA TCTGCATCCA CTGGGATGGG
  ATGGGATGGG ATGGGATGGA GGGTTTAGCT GCTGTATAGC AGCAGGTGGA GAGCAAAAGG
  Y
  TGAACCTAGG GTGAGGGAAG TGATGGATGC CCTCCTGGAG GCAGAAGCAA TTTGTCTATT
  TTTCCCATCC AAGGAAACAA TGCAGAAAAG GACAAGAAGG CCGAGAAGAA AACTCCTGAT
  GACAAAGTAA GTCCTTCCTC CCTGTAGAAC CCTGGTCCTC GTCCCAGCCA ACGTCTGACA
  TCACTCACAG CTCTTCCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61334368	NES16949409	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49034296					SNP	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61334368	NES16949409	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127343256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2359	CpG island 2359	615 bp proximal
Cpgi2360	CpG island 2360	1857 bp proximal
Rr402328	regulatory region 402328	978 bp upstream
Rr402329	regulatory region 402329	1644 bp upstream
Rr440928	regulatory region 440928	1741 bp proximal
Stac3	SH3 and cysteine rich domain 3	Intron