rs49035040 SNP Detail

Summary

• ID
  rs49035040
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77919698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCTCAC CACGTGGGTT
  CTGTGGGCTC GAGGTCATGC CTCTAGGCTT GGCAGCCAAC ACCTTCTTCA CATTGAGTCA
  TCTCGCCAGC CCAATGGGAA GCCTATTTAA ATGGCATTTA GTGTGACCAA AAAAAAAAAA
  ACATGTCTCC TTTATCTGGA TATGGATTAA TTTGGAGCAA TAGATGGATC TTTGTAGACA
  W
  GGAAAGCCAA GTTCACAGTG AAGTAACTTG GCCAAGGCGA CAAGGGCCAA CTGAACTACC
  ACTGGTTCAC AACACGTGAT CCACTACACA GTTTCGGAAA AATCTCTACC GAATACTACA
  CAAGATCTGC AGCCTTGGTT GTCTGAAACA GAATTGATGC CTTTAGGTAA CATGTTCTAA
  TTCTTTGTGT TCAATTGTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61428479	NES16804979	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49035040					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61428479	NES16804979	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77919698 () rs orientation: forward

Symbol	Name	Function Class
Gm23609	predicted gene, 23609	1556 bp downstream
Gm69108	predicted gene, 69108	within coordinates
Rr683456	regulatory region 683456	1291 bp distal
Rr683457	regulatory region 683457	1620 bp proximal