rs49035143 SNP Detail

Summary

• ID
  rs49035143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127763572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCTCCTT AGATTAGAAT
  CTAAAAAAAT AATAGCCGAA GGGAAGTGGG GGAAGCCACA CACAACAGAT AGACTCAGTT
  TTCCAGTCAT ACACTTGGTC GTAATGTTCT TGTCAGAGTT GAACTTGTTT ATGTGTGCTC
  CTTAAACGCC AATGTCAGAG CCCCAATCAG AGATGCAGAA AACAAGACAA GCAAGGCCTG
  Y
  TAAAAGCAGG TGCGTATTAT ATGTGTATAT TGGGGAGCGT TTATTTCCTT ATTGGATTTT
  CAGTGGCCGT TGTGAACACA GTGAAAAGCA CGTCTCTAAT GTGACTTTGG AGGAATCCCA
  TTTCTTCATT AACTGAGCAT TGAGAACAAA ATACGGGGAC CCCCCCCCCC CCCCGAGGTT
  AGGCTACAGT GTGAGCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135876668	ENSMUSSNP712119	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320958793	CHEV_3_127672841	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49035143					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127763572 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	998 bp upstream
Gm65460	predicted gene, 65460	804 bp upstream
Rr52	regulatory region 52	58 bp proximal
Rr584913	regulatory region 584913	1051 bp proximal
Rr584914	regulatory region 584914	1151 bp proximal