rs49036990 SNP Detail

Summary

• ID
  rs49036990
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54043824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGCCATA GTAATGAGAG
  AAACTCCAGG CTTGTCACTT GCTGTGACAC ACACTTTCTT CCATTCTTAA GCTTTCTAGT
  TTATAAAACG AGGACGGTAG CATTTTCTAG CTCATAAGAT TAAATAGTAC TACTTAACTC
  ATAAAATTAG ATCATCTGCT TAAGATTCAC TTTCACCAGA TTTTATTGCT TCAATGAACC
  C
  AACACCAAAG AAGGCCTAAT TTTTCCACCT TTGACCACAA GGGGGCACTG TTGCATAGAC
  TGAATGTCTA TAAGGGCAAG AAAGAAAAAA AAAAATCCTG TCACTTCAGC TAGCCTTTAT
  ACCTTGCAGC TCTCAGAAGT GCAGTTGTAA GTAGAAAGGA CGACAGAGCA GTCATTGCCA
  AGGGAGGAGC ATCTCTCAGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139548874	ENSMUSSNP1541628	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49036990					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54043824 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Rr492108	regulatory region 492108	1695 bp distal
Rr492109	regulatory region 492109	1924 bp distal
Rr492110	regulatory region 492110	within coordinates
Rr492111	regulatory region 492111	31 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Trav17	T cell receptor alpha variable 17	272 bp upstream
Tssr125501	transcription start site region 125501	96 bp upstream
Tssr125502	transcription start site region 125502	130 bp upstream