rs49037994 SNP Detail

Summary

• ID
  rs49037994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43878479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTACATT TCTAAAGCTA
  GACACCAAGG TCTCCTTCTT ACTCTCCCTT GATCCTGCAG AAAATTATTG TTTTAAACTC
  ATAAAGACTA AGTGAGAACT TAACCTAATC CAAAATAATC AAAAGTATAA TACTGTAATA
  CAACAGATAA ATTTCAACCT AATTTCCCTA AAGTTTCTAA ACAGCTTTAG ATGAATGATC
  R
  GAAGATGGGT TTGAGGAGAA AACCTTTTTG CCGGGGAGAT ACAACACACA TGTTAATGCA
  CCCCAGAAAG GGAACCCAGA CTGATCCATA GAACAATTTC CCCAGTGTCT AGCTTGGTGA
  ACCAGTGAGT TCGTCAGGAT TGGGGTTCCT AACAGAAGTA TGGATGAAGG GGTACTCATA
  GGAGCAACTG CGTCACTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62747690	NES17340475	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49037994					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62747690	NES17340475	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43878479 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	735 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	530 bp upstream
Rr527121	regulatory region 527121	191 bp proximal
Rr527122	regulatory region 527122	692 bp proximal
Tssr144685	transcription start site region 144685	399 bp upstream
Tssr144686	transcription start site region 144686	508 bp upstream
Tssr144687	transcription start site region 144687	564 bp upstream
Tssr144688	transcription start site region 144688	702 bp upstream
Tssr144689	transcription start site region 144689	859 bp upstream
Tssr144690	transcription start site region 144690	894 bp upstream
Tssr144691	transcription start site region 144691	914 bp upstream
Tssr144692	transcription start site region 144692	970 bp upstream
Tssr144693	transcription start site region 144693	1018 bp upstream
Tssr144694	transcription start site region 144694	1053 bp upstream
Tssr144695	transcription start site region 144695	1101 bp upstream
Tssr144696	transcription start site region 144696	1118 bp upstream
Tssr144697	transcription start site region 144697	1808 bp upstream
Tssr148130	transcription start site region 148130	916 bp downstream