rs49038314 SNP Detail

Summary

• ID
  rs49038314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:97939111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTGGAAC TTCAAAATAA
  CAAAAATTAG TTCCCAAGCT TGCCTTGTCC AATACGGAAG AAAGATAAAG ATGGGGAATG
  GACAGCAGCT ATTTAAGCAC AGTCAGCTCT ACTGTTTGAT CATAATCAGC ACATGCATGT
  TTACTCATGT TTCACTTAGT AAAGGTAGTA GTAATGCCAT GCATCTATTT TATAAGTAGT
  Y
  CCTGTATAGC TAAATACCCA ACTATGCATA CTCTCCCTAA AGATCTGATA CAATGCATTA
  TGTGTCAATT TATCTACTTG TCAGTATAAT GTATTCCTTA TCTAATTCAT TCGACTTTGT
  GGAATTCTTA CAGGGAAGAG GAATTACATT TTTCATGATA TTGTTCCCAG TGCTGGGACT
  ATGCCAGGAG TTCAGTGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss137982505	ENSMUSSNP3140906	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49038314					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:97939111 () rs orientation: forward

Symbol	Name	Function Class
Rr258643	regulatory region 258643	1290 bp proximal
Rr269010	regulatory region 269010	1055 bp proximal