rs49039039 SNP Detail

Summary

• ID
  rs49039039
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23926033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCA TATTCTTATC CCCCCTCCCC
  C
  CTTCTGAGTT TCTCATTTCC TCCTG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148807972	ENSMUSSNP301870	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss324291305	CHEV_13_23833919	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49039039					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23926033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	1988 bp distal
Gm60901	predicted gene, 60901	251 bp upstream
Rr369656	regulatory region 369656	1512 bp downstream
Rr388130	regulatory region 388130	within coordinates
Rr475932	regulatory region 475932	within coordinates
Rr475933	regulatory region 475933	262 bp proximal
Rr475934	regulatory region 475934	1089 bp proximal
Tssr118857	transcription start site region 118857	1875 bp downstream
Tssr118858	transcription start site region 118858	251 bp upstream