rs49039944 SNP Detail

Summary

• ID
  rs49039944
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3843054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAACCTCC ACCCCAGCTT
  TCTTTGTCCA GATGTGGTGG GGTGTACCTC CGTAAGGTGG GAGAGTGCCA GAAAAAGTGT
  CTTTATTGAG TACCTACAAA GAGGGACAAA CCCTAAGTTC CTTTTTGGAA TAGGTGCCAC
  CCGGGAACCC CAAGAGTTTT AGCTGTGGCA TATTGTACAT CTGTTTTGCA CAAAGGAAAA
  Y
  ACTCCTTTAG ACTCTTTTCC AATCATGTCT TTCTTGGGGG GGGGGCAGAT GGAGAGTGTC
  ATGGAGTAGG AGAGAAAGAC AGGGGCATGT TACTTGAGAA GTGGAGGAGG GCTTGGCTCA
  CCAGGGTTTA GGGAAGAACT CCAGGGCCAG GCTTCTCTCT CCCTGTAGGT GTGGCATTGG
  CTTAGGAAAC TCCAGGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61337744	NES16944832	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49039944					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61337744	NES16944832	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3843054 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4361	CpG island 4361	859 bp distal
Gm60243	predicted gene, 60243	within coordinates
Rr403217	regulatory region 403217	934 bp downstream