rs49040963 SNP Detail

Summary

• ID
  rs49040963
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149211524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCGCGGCC CGCAGCATCT
  TGGAATCTGT TTGCATTTGT GGTACTTAAG AGTGCCTTCC TAGAAAAATG GAAAAACAGG
  TAAAGTGGGT GAGCTGGCTT GCATTTCAGT AGGCCAACTA CAGAACTTGC GTGGGGATTT
  AAATTGTCTG CTGGGTGTGT TACAGTTAAG GGGAATCTTA AGTTTGTTTC TTGTTACCAT
  K
  CAGATATACT AAGGTCTTAG TTATTGCTCC ACTCAGCCCC CATCAGGTTC TCTTTTATCA
  GTCCACTAAA ATTACTAAAG AAGTATTTTT GCTTTGGTAT TAAAGGGCAG TAGTGGACTT
  GGAGAAGCCC GCTTGAATTC TAGTGGCAGG GAATATTTTG AGAGTAGCCT AATTCAGTAG
  TTTTGTTTTT AGCACAATTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss60961293	NES16169787	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs49040963					SNP	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60961293	NES16169787	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149211524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18192	CpG island 18192	153 bp distal
Gm56997	predicted gene, 56997	351 bp upstream
Resf1	retroelement silencing factor 1	within coordinates
Rr380294	regulatory region 380294	within coordinates
Rr380295	regulatory region 380295	1464 bp upstream
Rr641718	regulatory region 641718	1783 bp distal
Rr641719	regulatory region 641719	542 bp distal
Rr641720	regulatory region 641720	684 bp distal
Rr641721	regulatory region 641721	635 bp distal
Rr641722	regulatory region 641722	362 bp distal
Rr641723	regulatory region 641723	within coordinates
Rr641724	regulatory region 641724	597 bp proximal
Tssr59650	transcription start site region 59650	708 bp downstream
Tssr59651	transcription start site region 59651	588 bp downstream
Tssr59652	transcription start site region 59652	544 bp downstream
Tssr59653	transcription start site region 59653	468 bp downstream
Tssr59654	transcription start site region 59654	271 bp downstream
Tssr59655	transcription start site region 59655	202 bp downstream
Tssr59656	transcription start site region 59656	302 bp upstream
Tssr64179	transcription start site region 64179	376 bp upstream
Tssr64180	transcription start site region 64180	341 bp upstream