rs49041013 SNP Detail

Summary

• ID
  rs49041013
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:43129911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGACTGG AGATACACCT
  GATGTCTTCA GTCATGCTAG GCTGGCAATC TGCCCACTGA GCTACATTCC CATGGCCCCC
  TGTTGCTTTT TAAAGAGCAA GCTCCAGGCC TTTTACAGTT CTACAGCTAG AAGAAGCTGC
  CAGTGGAGCA CAGTACCAAC CTTTGTCTCT AGACAGTTTA GGCCAAAGCT GAATTGGCCG
  K
  GCAGGCTGCA AAAGCTCTGT CCCCAACTTT AGGGCCAGAA GACTTCAACT CAGATATGAC
  AGGAGGAAGG AGAGCAGAGA AAATAAGGCC AGGAGTTGTG CCGAGTCTTA CCGATGAGCT
  GAACATGCAC ACCTTGCCAT GCACAGTGAA CTGAAATCCA GAATCCACAG CCTAACTCCA
  CAGTAAGACC TCCATGGGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss149008193	ENSMUSSNP5081204	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49041013					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:43129911 () rs orientation: forward

Symbol	Name	Function Class
8430432A02Rik	RIKEN cDNA 8430432A02 gene	1837 bp upstream
Cpgi213	CpG island 213	905 bp proximal
Rr410291	regulatory region 410291	1347 bp proximal
Rr410292	regulatory region 410292	1848 bp proximal
Rr410293	regulatory region 410293	1968 bp proximal
Tgfbrap1	transforming growth factor, beta receptor associated protein 1	within coordinates
Tssr11467	transcription start site region 11467	1687 bp downstream