rs49041107 SNP Detail

Summary

• ID
  rs49041107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:64507547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAG CTTCTCTTTA TCAAAAGGCA
  Y
  GTGCCCAACC AAGGCCAAAA AAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62424192	NES17252551	PERLEGEN	MM_PANEL2	f	SNP			T	C	T		C	T	C		T
ss139627383	ENSMUSSNP3336218	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324654904	CHEV_14_64888935	CHEVERUD	SCREENING_POP	f	SNP						T				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49041107					SNP	T	T	T	C	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62424192	NES17252551	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:64507547 () rs orientation: forward

Symbol	Name	Function Class
Gm41176	predicted gene, 41176	within coordinates
Msra	methionine sulfoxide reductase A	Intron
Rr493865	regulatory region 493865	1958 bp proximal