rs49042260 SNP Detail

Summary

• ID
  rs49042260
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76847656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTCCACTG TGTCCTTCCG
  AGTCCTCTGG TGTCTTGGTT GTTGGGTAGA AAGACCACAC ATGAGCACAA TTTCATTGCA
  TGTAAGAAAG CACATAGCCA GCCCAGCTCA GCACTGGGCT ATAGACCTGG CTCTGCTGCT
  GAAGGTGTTT CTAGGTGCCT CAGCCTCCCT ACTCATGCTA TTCTTAGCAT CTTCTTTAGA
  W
  GAAAATGTCT CAGCACGAGC ACACTCCAAG TAGGGCTTGG CACTCACCCC TAGAGGACAC
  AGGCTCGTGA ACCCTGCCTG TTTTCTCTCT TACACTTTAA CTCACCTATT ACCTTGGCAC
  GGACTCTGCT CTTGCATGGA TTATATAATC TGGAAACGGT CTGTATGGCT CATCATCACC
  CCAGTGTTGG CCTCTGGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52376405	NES15271939	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49042260					SNP	A	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376405	NES15271939	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76847656 () rs orientation: forward

Symbol	Name	Function Class
Gm3137	predicted gene, 3137	within coordinates
Gm10787	predicted gene 10787	173 bp upstream
Rr434365	regulatory region 434365	477 bp proximal
Tssr94202	transcription start site region 94202	162 bp upstream