rs49042356 SNP Detail

Summary

• ID
  rs49042356
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:119912057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACAAGAAA TTGAGTGAAT TAAAGTAAAC TGCCTCTAAA
  TAATATATTA AAACCATTTT ATCTTAAGAT ATTTTAAATA ACTATGTTAT TAAACATAAT
  K
  AATATTTTCC TTCCAAACGG GATATTATAT AAATGAGCTA ATGCACAAAT GCAAAAACTT
  TTGGATCATC TCAAAGAAAG ATCAGCCATA TTGATCTAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss138915088	ENSMUSSNP6093729	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324207703	CHEV_12_121186795	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49042356					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119912057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5238	CpG island 5238	1572 bp distal
Rr474318	regulatory region 474318	1902 bp distal
Tmem196	transmembrane protein 196	Intron