rs49043377 SNP Detail

Summary

• ID
  rs49043377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74790262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTGGACA GCGTGGTCCT
  CAGGCATGGA TAGACCTGCT GAAGGCACAC CCTCCCCCAC TGGGGGCCAT GCAGCAAGAT
  CACGGACAGA ATTCTTGGAA ACATCCCGGA CACCTTCCCT TGCCTCAGAC TTCAACAATC
  CTACAATAAT CACAACAGGA TACTGGTATA CCAAGCCTGC TGCCCAGTTT CGTGCTTCAC
  Y
  GGGAAGAGAT CCAAGGCTGA GTAAAACAAA GTAAGCTCGG TGTTACACCC TTTAGGAATT
  TCAGGTCCAT TTTATCTGCC AATTAAAAAG TTTAAAGATG GGGGGTCGGG CAGGGCTCGT
  GGATCCCAGA CACAGTAGAC AGCAACAGGC ACAGGGAAAG TACCTACCAA GCAGCCAGGG
  GATTCCAAAA CTGAAACCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52570513	NES15642375	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49043377					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52570513	NES15642375	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74790262 () rs orientation: forward

Symbol	Name	Function Class
Gm62792	predicted gene, 62792	within coordinates
Rr504378	regulatory region 504378	within coordinates
Rr504379	regulatory region 504379	1110 bp proximal
Rr504380	regulatory region 504380	1210 bp proximal
Tssr131597	transcription start site region 131597	292 bp upstream
Tssr131598	transcription start site region 131598	340 bp upstream