rs49043795 SNP Detail

Summary

• ID
  rs49043795
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131708850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACGCACCT TTCTGCCTCT
  CTGTATTTTC AAATATAACT TTATTTTAGA AAATACAATC TATTTTTCTT TAGATGTTCA
  CATTTTTATC TTTACAATGT TTTGGTTGAA AAATTTTGAT CGTGAAAGTG GTAAGGGATA
  TCTGGACTGA TACCTAGAAT TCTTAAAAAC AACAACAACA AAAAACTATA TCAATTCAAG
  Y
  TGGGCATGAT GGCACAGGCC TGTAAACCTA GTACCTGGGA GGCGGATGAT AGCAAGTTAT
  AGGTAGGACA GGGCTACATA GTAAGGCTCT GTCTGAAAAC ATAAACAAAC AAACAAACAA
  ATTCAACTCT CTTTTTTCTC TCTTTGTAGC CTAGGCTTGC CTTAAACAAT CCGCTCGCCT
  CCAGAGAACT GGTATTACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321329602	CHEV_4_131537454	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49043795					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131708850 () rs orientation: forward

Symbol	Name	Function Class
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Rr600833	regulatory region 600833	406 bp proximal
Rr600834	regulatory region 600834	559 bp proximal
Rr600835	regulatory region 600835	1225 bp proximal
Tssr43622	transcription start site region 43622	1187 bp downstream