rs49043853 SNP Detail

Summary

• ID
  rs49043853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34886911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTCTCAT GGCCTGGCCC
  CTCTCGCTCT TCCTACAGAT GGTGCTTTTT GCATAGGTAG AATGCCCCGG GGACAGGGTT
  GGGCAGCAAC CCCACCTCTG TCTGTCCCTT GACTCCTGAA GGAGAACTGG ACTAGACCTC
  TTGGGCGGGG CCTTTTCTGA TTCCCTGTGC CCAGGAGTTG GGGGTCTAAA AGAGCAGTAA
  Y
  TGGGGTCTTG ATTGTCCCCT TTCCCAGCCA GTAGGAAGTG GCACACAGTA GGGATGCAGC
  CAAATAGCTC TCTTTCTGCC CTTTGACCCC TGGAGATAGA GAAAGGCTGA AGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGATCTTTAC CTTCTGCTCT GTGCCCTTCC ATGAGAAACT
  CCAGCTGGAG AGATGTAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60993774	NES16130698	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49043853					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993774	NES16130698	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34886911 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18861	CpG island 18861	691 bp distal
Rr645330	regulatory region 645330	1764 bp distal
Rr645331	regulatory region 645331	1091 bp distal
Rr645332	regulatory region 645332	1497 bp distal
Slc7a10	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	within coordinates
Tssr65893	transcription start site region 65893	1117 bp downstream
Tssr65894	transcription start site region 65894	1078 bp downstream
Tssr65895	transcription start site region 65895	1054 bp downstream