rs49043901 SNP Detail

Summary

• ID
  rs49043901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77040675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACGTGTG TGTCATGGCA
  TGTGCACATG TGCATGTACA CACCTACATA CACAATACAT GAACGTAAAC AATTTTCCCC
  CTTCCCTTCT CCCGCTTGCT CCTGTCCTCC CACCCCCCAC CCCCCTGCTC CATCCGGGTT
  CTGCTTCCCA CCCTGCAAAT GTAAACAATT TTTTAATGAG ACAAACGAGA GGTATAAGCA
  Y
  GACCTCCTCA TCAGACCTGG AGCAGTGCAC ATCAGACCAT GTGAAATACA AGGACCTGGG
  GAGAGGCGGC TCAGTGTGTG GGACTAGTGT GCGTGACCCC TTGGGTTCCA TCCCAGAATC
  CCAGGGGGAA AGATAATAGC TTTTGTCACT AGAGGTCTCT AACAAGAAGA TGAAAACCCG
  GAGAGATGGG GTGCAGGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52373165	NES15266497	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49043901					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373165	NES15266497	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77040675 () rs orientation: forward

Symbol	Name	Function Class
D10Jhu60	DNA segment, Chr 10, Johns Hopkins University 60	8 bp proximal
Gm35837	predicted gene, 35837	1546 bp upstream
Rr384958	regulatory region 384958	1696 bp downstream