rs49044013 SNP Detail

Summary

• ID
  rs49044013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67061684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAAGCCCTC AGTAAAGGCT GCTCTGAGAC ACGCCTCTCT
  CCAGCTGCAA AGCATAAGAT GCTATTTTAT TAAAACTCTT TGTACAATTT ATTTTGATCA
  Y
  ATTCTTTCTC TTCCCCCAGT CCCTCCCAGA TCCTCTCCAC CTCCACACCC GCCTGACTAA
  ATGTTCTTTC TCTCTCAAAA AAAAAGGGAA AAAGAAAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136578026	ENSMUSSNP1166147	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss322989811	CHEV_9_67002209	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49044013					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67061684 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr5	DNA segment, Chr 9, Derry C. Roopenian 5	1163 bp proximal
D9Mit302	DNA Segment, Chr 9, Massachusetts Institute of Technology 302	1160 bp proximal
D9Mit302.1	DNA segment, Chr 9, Massachusetts Institute of Technology 302.1	939 bp proximal
Gm19299	predicted gene, 19299	within coordinates
Gm40529	predicted gene, 40529	1983 bp downstream
Gm68695	predicted gene, 68695	within coordinates
Rr681887	regulatory region 681887	712 bp distal
Rr681888	regulatory region 681888	277 bp distal
Tssr90326	transcription start site region 90326	817 bp downstream
Tssr90327	transcription start site region 90327	844 bp downstream