rs49044252 SNP Detail

Summary

• ID
  rs49044252
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88188084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GCTGAGCCTT TGTGGGGGTG GACAAGCATG CTCTCCCATG
  TGTCCTGATG TGTACTCACA GCGGGGCATG GTGACAGGCA AGGGGAGATC AAACTACTGC
  C
  CAGCCTGTCC CCAGGGACCT TGTTCCTAAA GCAAAAAGGC AGATGCATGC ATAGACACTG
  TGAAGCGCTA CACCTGGGAG ACGGTACTCA CACAAAGCCT A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss144898942	ENSMUSSNP2304268	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs49044252					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88188084 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Tssr7958	transcription start site region 7958	1237 bp downstream
Tssr7959	transcription start site region 7959	1217 bp downstream
Tssr7960	transcription start site region 7960	1194 bp downstream
Tssr7961	transcription start site region 7961	1165 bp downstream
Tssr7962	transcription start site region 7962	1005 bp downstream
Tssr7963	transcription start site region 7963	975 bp downstream
Tssr7964	transcription start site region 7964	948 bp downstream
Tssr7965	transcription start site region 7965	924 bp downstream