rs49045073 SNP Detail

Summary

• ID
  rs49045073
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38605073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTCAGTGC CGGCCGGGAT CCCAGCTTGG GCATTGGGAA
  TCAGGCTTCT TCGACTCAGA ATTCCTGCTG TGACCTGTCA GCCATTCATT CCTAGATACA
  Y
  TTCTTAGCGT TTAGTGCCTT TCTCTTTTAA TTTAGAAACG ACAAGCAAGG CTTCCCGATA
  CTGCATGGGT ATTAATAGTG TGTGTATTGG CACGACGAGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60446799	NES16430270	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49045073					SNP	C	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60446799	NES16430270	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38605073 () rs orientation: forward

Symbol	Name	Function Class
Tssr138414	transcription start site region 138414	468 bp downstream
Tssr141114	transcription start site region 141114	1186 bp upstream
Tssr141115	transcription start site region 141115	1098 bp upstream
Tssr141116	transcription start site region 141116	975 bp upstream
Tssr141117	transcription start site region 141117	845 bp upstream
Tssr141118	transcription start site region 141118	428 bp upstream
Upk1b	uroplakin 1B	within coordinates