rs49045987 SNP Detail

Summary

• ID
  rs49045987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126932007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGAGCTC ATAGAAATCT
  TCCTGCCTCT GATTCCAGAG TGCTGACTTT AAAGACATGT ACCACCACAC CCATGTTTTT
  TATTTTATTT TATTTTATTT TATTATTTTT GTGGGCTGGA AAGTTGACTC AGTGGTTGAG
  AGTAATTGCT GTTCTCACAA AGGATGAAAG TTTGATTCCC AGCCCCCACT TGGAGGCTCA
  Y
  CACCTCCTTA CACACCAGGC ATGCATTTGG TGCACAGATA TGCATGCACA CAATAATAAA
  AATAAATCTA AAATTTAAAC CTTTTGTTAT TGGTGGGGAG TGGGGGGGGG GCTACCATAG
  TGCACAGGTG GGGGTCAGGG GACAACTTTG AAGGGTCTGT TCTCTCCTTC CACTGTGGCT
  CTTGGACCTA AATTCAAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145879506	ENSMUSSNP3192477	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C		C
ss322451435	CHEV_7_134476349	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49045987					SNP	C	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126932007 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	within coordinates
Tssr69200	transcription start site region 69200	473 bp downstream
Tssr69201	transcription start site region 69201	735 bp upstream
Tssr69202	transcription start site region 69202	767 bp upstream
Tssr69203	transcription start site region 69203	815 bp upstream
Tssr69204	transcription start site region 69204	946 bp upstream
Tssr69205	transcription start site region 69205	1878 bp upstream