rs49045990 SNP Detail

Summary

• ID
  rs49045990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70213601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTGGCAAG GGCTTCATGC CCAGCCCTGA GCTAAGCACA
  TCAGCTAGCT AAGTCTCACG CCCACCCAAT TTTAGTGGAA AAAAAAAGCG CAGCAGGCAG
  Y
  GATGACAGCA GTAGAAAGGC TTTGGGTGGG GCGCGCTTTT CCGTGGAAGT GAGCTTAGCA
  TCTTGGCAAG GACCAAAGAG TTTTGTTGTT GTTTTTGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132369484	ENSMUSSNP6444682	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323735029	CHEV_11_70136277	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49045990					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70213601 () rs orientation: forward

Symbol	Name	Function Class
Alox12e	arachidonate lipoxygenase, epidermal	147 bp upstream
Cpgi3180	CpG island 3180	352 bp distal
Rr450275	regulatory region 450275	923 bp distal
Tssr108941	transcription start site region 108941	299 bp upstream
Tssr108942	transcription start site region 108942	261 bp upstream
Tssr108943	transcription start site region 108943	238 bp upstream