rs49045991 SNP Detail

Summary

• ID
  rs49045991
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90714080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTC CGCAGTTCGC TGAGACAGTC
  Y
  AGGGAGGACA AGCCACTGGC TCCGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133379017	ENSMUSSNP3958737	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321852508	CHEV_6_90687092	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49045991					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90714080 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17726	CpG island 17726	within coordinates
Iqsec1	IQ motif and Sec7 domain 1	within coordinates
Rr399763	regulatory region 399763	639 bp upstream
Rr634305	regulatory region 634305	788 bp distal
Rr634306	regulatory region 634306	464 bp proximal
Rr634307	regulatory region 634307	512 bp proximal
Tssr62039	transcription start site region 62039	947 bp upstream
Tssr62040	transcription start site region 62040	321 bp upstream
Tssr62041	transcription start site region 62041	281 bp upstream