rs49046843 SNP Detail

Summary

• ID
  rs49046843
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37087470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGTGAGA GAGGAAGGGA
  AGGAGACAGG GAGACAGAGA AACAGAAAAA CAGAGACTGA GGCTGGGTCT TGGCTAGGTG
  CCCCTGGCTA GTTTGAGTAC AGTAGCCAGG ATAAGAACTG TGAACTTTCT GATTCCAGAT
  TCTGGGCTCC TACCCACTTG GAAGTGATGC CTTTTGAGGG ACTGGTGAAG AAGCAGATGG
  M
  TTTTTATAGC TCCTCAGGAA GTAGATTAGA GAGGCCTGTC ACGAGGTCCT TGGAGAATAA
  AGGAAATCAA GGAGGCCAGC CAAGCAGACT CTGTGGCCAA GTATTTATCA TCCTGCATCA
  CTTAGCTCTT ACACATTCAC TCATTCATCA GATGCTTATT CTGAGCCTTC TGTCTTGGGC
  ACCGGGTTGA GAAAAGCAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61379707	NES16766887	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49046843					SNP	C	C	C	C	A	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61379707	NES16766887	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37087470 () rs orientation: forward

Symbol	Name	Function Class
Gm67648	predicted gene, 67648	within coordinates
Rr401317	regulatory region 401317	913 bp upstream
Rr676635	regulatory region 676635	within coordinates
Rr676636	regulatory region 676636	803 bp proximal
Rr676637	regulatory region 676637	1085 bp proximal
Rr676638	regulatory region 676638	1230 bp proximal