rs49047500 SNP Detail

Summary

• ID
  rs49047500
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72345064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTT TGCCCCACAG TCAGTTTCAT
  W
  TATGATTTAT TTTTGGTTTT TTGTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss136620993	ENSMUSSNP2192277	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
ss323002347	CHEV_9_72285589	CHEVERUD	SCREENING_POP	f	SNP			T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs49047500					SNP	T	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72345064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22015	CpG island 22015	236 bp proximal
Mns1	meiosis-specific nuclear structural protein 1	212 bp upstream
Rr401506	regulatory region 401506	596 bp upstream
Rr682742	regulatory region 682742	263 bp proximal
Rr682743	regulatory region 682743	764 bp proximal
Tssr85997	transcription start site region 85997	203 bp upstream
Tssr85998	transcription start site region 85998	737 bp upstream
Tssr85999	transcription start site region 85999	752 bp upstream
Tssr86000	transcription start site region 86000	797 bp upstream
Tssr86001	transcription start site region 86001	827 bp upstream
Tssr86002	transcription start site region 86002	1061 bp upstream