rs49048162 SNP Detail

Summary

• ID
  rs49048162
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148529159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC CCGTGCCACA ACTCAATAAC
  S
  CGCCTCAGCC CGCAACCCCT ATCGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss148007720	ENSMUSSNP6409012	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		C
ss321420471	CHEV_4_147818811	CHEVERUD	SCREENING_POP	f	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs49048162					SNP	G	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148529159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15303	CpG island 15303	within coordinates
Gm23303	predicted gene, 23303	1217 bp upstream
Rr604684	regulatory region 604684	33 bp proximal
Rr604685	regulatory region 604685	59 bp proximal
Tssr44605	transcription start site region 44605	203 bp upstream
Tssr44606	transcription start site region 44606	31 bp downstream
Tssr44607	transcription start site region 44607	42 bp downstream
Ubiad1	UbiA prenyltransferase domain containing 1	within coordinates