rs49048206 SNP Detail

Summary

• ID
  rs49048206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14372670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTA TGAATAAAAT AATAGAAATT
  Y
  AGTGGAAACA AGCAGAAATA AATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138986186	ENSMUSSNP6897263	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49048206					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14372670 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6156	CpG island 6156	781 bp distal
Pxk	PX domain containing serine/threonine kinase	1108 bp upstream
Rr487875	regulatory region 487875	702 bp distal
Rr487876	regulatory region 487876	822 bp proximal
Rr487877	regulatory region 487877	1265 bp proximal
Tssr124234	transcription start site region 124234	1286 bp downstream
Tssr124235	transcription start site region 124235	1093 bp upstream