rs49048626 SNP Detail

Summary

• ID
  rs49048626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:75555563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGTAGT TGCTGGGAAT
  TGAACTCAGG ACCTCTGGAA GAACAGCCAG TGCTCTTAAC TGTGGAGCTA TCTCTCCAGC
  CTTTTAAAGA CTGTTTAATG CTGGGCAAAG GGGAAAAATA AAGAGTAGCT TTACTAGGGG
  CAAGTTACAA AGTAGGGCTG GACAGAGGAA GGCAAATGGC TTTGGGGATG AGTGCTGTTA
  Y
  AATAGGAGGA GTGCAACCCC AGTCCCGGGC AAGTGGAAAC AGAAGCCCAA TGTCACCCTC
  AGCTACACAG AGGCCAGCTT AGGCTGTAGG AAACCTCATC CCAAACAAAC AAATGAATGG
  ATTAATGTAC ATACTCACGT TTTCCTGGCA GGGTTTTGAG GGATAAGCTG CCATGGGTCA
  CAGTAGACAG ACTTAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144696827	ENSMUSSNP5494319	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49048626					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75555563 () rs orientation: forward

Symbol	Name	Function Class
Gm69448	predicted gene, 69448	1086 bp upstream