rs49049924 SNP Detail

Summary

• ID
  rs49049924
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12197313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATACACAC AAAACAGTGC
  ATGTATCCAT GGGTCACAGA ACATACCTCC AAGGACAAAG GGTGACTACT ACTGTCATTC
  TTACAAGCAA GGGCTGAAGA AAGAGGTATC TTTGAAAATT GCATGTGAGG ACTTCAAAGC
  ACAAACGGGA TCCGAGGCTC TGCAGGCCTT TACTGAGCAC CAAACACCGT GTTTGACAAT
  R
  TACACACAAC AGGCAGACTA GGTTCTAAAG CTGCACTGCA GTCTGGCCAC ATCCCATCTT
  TCCAACAGTG CCCTCTCCTC CCTCATCTCT TAGCATATGG CACCACCCCC CCACATCCAC
  CAAGTTAGGC TCGAAGAGAT GTTAGGTGTG TAAATGCATC CCTCTTGCCC AGCTAGCTTC
  ATCCCTGCTC TTCTGACTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61744044	NES17670698	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49049924					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61744044	NES17670698	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12197313 () rs orientation: forward

Symbol	Name	Function Class
Gm10336	predicted gene 10336	290 bp downstream
Mtr	5-methyltetrahydrofolate-homocysteine methyltransferase	285 bp downstream