rs49051160 SNP Detail

Summary

• ID
  rs49051160
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:5350673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCTTCTG ACTTGTGCCA
  AGGCTGAGGC CTGGCTGTCT CTGTTAGGTA GTGTGACCAC TGCTGATTCG TGTTTGCTAT
  CCTGACTCTA CCGACAGGAC TGCTGGTGTG TCCATAGAGT GTTTGTGAGT GGATTGAGCT
  GCTGCAGCCA ACCTGTAAAC AACACAGACA AGAGTTATTC CAAAAAGCTT TGTAAACAGG
  S
  CTACTTCCCC GTATCCTTTC TTTTTTACTA CCTCTGGTAG GTGGTGAGCT ACAAGGGAGA
  TTAAAACAAT TAAAAACCAT CATTAAAAAT TGGCATTAAG GGGCTGGTGA GATGGCTCAG
  TGGGTAAGAG CACCCGACTG CTCTTCCGAA GGTCCAGAGT TCAAATCCCA GCAACCACAT
  GGTGGCTCAC AACCATCCGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146577999	ENSMUSSNP5134645	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325518189	CHEV_18_5350671	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49051160					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:5350673 () rs orientation: forward

Symbol	Name	Function Class
Gm50064	predicted gene, 50064	within coordinates
Gm52372	predicted gene, 52372	1524 bp downstream
Gm58537	predicted gene, 58537	within coordinates
Rr533383	regulatory region 533383	1562 bp distal