rs49052468 SNP Detail

Summary

• ID
  rs49052468
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4267500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGCCGA GAGCGTGCCG
  AGAGGGCTAA GAAAAGAGGC GCGCCTCCGA GGGAGGTGCG GGTGCTGCCT CCCTGTAATA
  CCCCAGAAGA GGCCGATTTC AATGGTCGTG TCTAGCAACC ACAGAACTCG AGAGGCTCAG
  TGGGGGAATC CTTGAAGACC CTCACAGTCC TCTACTCAAG CTCTTGCACC TGCTCCGACA
  S
  CCCCCTTCTC TAGCACTTGG AGACAGACAC TCTCCTAGAC AAGGGATAGG CTGGGCCTTG
  GCAACCAGTA GGGCGGGATC ATTGTGCCTC TGGCCCACCA ACCAATCCAG CCATTTTGTG
  TGCCCTGGTC CTCTTTTCCT GCACTTGATG ACTATGGAGG CTAGATAGTC CTGCGACACC
  TGTGCCAGGT CACCTATTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61075544	NES16047936	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	C	C	C	C	C	C	C	C	C	G	C
ss148555663	ENSMUSSNP6978046	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49052468					SNP	G	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61075544	NES16047936	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4267500 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20046	CpG island 20046	57 bp distal
Gm64374	predicted gene, 64374	1962 bp downstream
Prr36	proline rich 36	41 bp upstream
Rr658993	regulatory region 658993	within coordinates
Tssr80255	transcription start site region 80255	1489 bp upstream
Tssr80256	transcription start site region 80256	497 bp upstream
Tssr80257	transcription start site region 80257	457 bp upstream
Tssr80258	transcription start site region 80258	374 bp upstream
Tssr80259	transcription start site region 80259	332 bp upstream
Tssr80260	transcription start site region 80260	248 bp upstream
Tssr80261	transcription start site region 80261	199 bp upstream
Tssr80262	transcription start site region 80262	within coordinates