rs49053949 SNP Detail

Summary

• ID
  rs49053949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125995744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGGTGGAG TAGGTAAGGG ACTAGAGCAC AGGTGCTTCC
  TCCCTGTGCA GCCGAGGTGG GCTTCCTTAC AGTGAGCGGA TGCCCTTGCA TCATCAACTG
  Y
  CCAGAAGCTA CCGGAAGTCC TGATGGGGTT TTAGAGAGGG TTTTATAGGC TTACTTGCTA
  ACCGAGTGAA AGGAAATCCT CAGGGCCTGT CAGGTTCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147495710	ENSMUSSNP1849053	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49053949					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125995744 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	1225 bp distal
Dtwd1	DTW domain containing 1	within coordinates
Fam227b	family with sequence similarity 227, member B	1820 bp upstream
Rr367293	regulatory region 367293	1738 bp downstream
Rr564315	regulatory region 564315	1831 bp distal
Rr564316	regulatory region 564316	1673 bp distal
Rr564317	regulatory region 564317	1677 bp distal
Rr564318	regulatory region 564318	within coordinates
Tssr19931	transcription start site region 19931	1678 bp downstream
Tssr19932	transcription start site region 19932	1612 bp downstream
Tssr26028	transcription start site region 26028	1863 bp upstream
Tssr26029	transcription start site region 26029	1815 bp upstream
Tssr26030	transcription start site region 26030	1782 bp upstream