rs49054389 SNP Detail

Summary

• ID
  rs49054389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100896801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTCTTCT CATAGCGTGT
  TGAGGTCCTT CTCCAGCTGC AGCACTGTCT CTCTGAGGGC AGGGTCCTCT GCCCAGTTGG
  TTTTACTCGC CAAAATAAGG CCCTGTAATT AAAGAAAAAT TCTAAGTACT CAATTTAACA
  AGACTAATCC TTTCCTGATT TTTTTTTTCC TGGACAGTTT TCATGTAGCC TAGGTTGGCC
  Y
  TGAACTTGCT ATGCATCAAC TCTGCAGCTG AGGACAGCCT TGAACGTCAG ATTTTCGGCC
  TCTACTTACT CAGTGCTAGG ATGACAAGGA CCTGCCACCA TGTACAGTTC ACGTGGGCTG
  GGGGTCACAG CCAGGGCTTT GTGCCTGCCC TGTGCACTAT GTCCCCAGCA CGCTTACACT
  TATGCTACAT CATCTAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52685829	NES15521463	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49054389					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52685829	NES15521463	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100896801 () rs orientation: forward

Symbol	Name	Function Class
Cenph	centromere protein H	within coordinates