rs49054513 SNP Detail

Summary

• ID
  rs49054513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141149257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCTGCCC GTCTGGACAG
  GGACCCCCGC TGCCTGTGGA TGAGCCATCG GACCTCCTCC GCCTTCAGAG CGGAGAGAAG
  CTTCCGTTCC TCTTCCTCCT CCTCCTCCTC CTCTTCTTCT TCGGCCTCCC GTGCCCTTCC
  AGCCCAGGAC CCACCCATGG AGAAGGCTTT GAGCATGTTT TCAGACGACT TTGGCAGTTT
  Y
  ATGCTGCCCC ACTCGGAGCC CCTGGCCTTC CCAGGCAAGT GCTGGGGCTC TGAGGGGAGG
  GGAGGGCCAC AGGTGGGGGA CATCTGCTCC AGGCCATCGC CGAGCATGCT GTGGCCACCC
  ACCTGCCAGA CATAGGTGCC GCATGGGTCA CAGCCATATG TGGCTGTCAA GGTAGACCTG
  GCCACCAAGA CAGATGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147735993	ENSMUSSNP360565	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49054513					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141149257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	106 bp distal
Gm70184	predicted gene, 70184	887 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40052	transcription start site region 40052	1709 bp downstream
Tssr40053	transcription start site region 40053	1148 bp downstream
Tssr40054	transcription start site region 40054	270 bp downstream
Tssr40055	transcription start site region 40055	257 bp downstream
Tssr40056	transcription start site region 40056	236 bp downstream
Tssr40057	transcription start site region 40057	175 bp downstream
Tssr40058	transcription start site region 40058	148 bp downstream
Tssr40059	transcription start site region 40059	124 bp downstream
Tssr40060	transcription start site region 40060	64 bp downstream
Tssr40061	transcription start site region 40061	54 bp downstream
Tssr40062	transcription start site region 40062	562 bp upstream
Tssr44314	transcription start site region 44314	677 bp downstream