rs49054687 SNP Detail

Summary

• ID
  rs49054687
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88531884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACTCCTT TCTGTGCTCT
  GAGTGCGTTT TGTGGTTGTG TGGTTGGCAC ATTACGGCTT GGCGTAAAGC ACTGTTTAGA
  AACTAAATAA ATAAAAAATA AAAAAGTGGA AATACTAAAG GTGTAGTTTT CTTCCCTCTG
  CAAGGCTGTC AGGCAGGTTT CCAGCAGAGC TGGGCCAAAG GACCAGAATC AGGAACGCTG
  Y
  CTGGGAGCTA CCCACCATCA CGGTATGGTA TCTAGGCACA TCCTCATCAC ACATCAGAGG
  GAAAGAGTGC TTCCCCTGCC ACTAGAGGAA TGAGACTGTG TGCTGCGTGC GTGCGACTGT
  GGCCATCAGT TCGTACTCAG TGGGACCCCA GGTCCTGACA AATTGAGCTG GGCACGTGGC
  AGGGTTCTAT AAACATGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145451972	ENSMUSSNP2329383	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss322761681	CHEV_8_90329155	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49054687					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88531884 () rs orientation: forward

Symbol	Name	Function Class
Tssr82324	transcription start site region 82324	854 bp upstream
Tssr82325	transcription start site region 82325	793 bp upstream
Zfp423	zinc finger protein 423	within coordinates