rs49054725 SNP Detail

Summary

• ID
  rs49054725
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101048716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGG AGCAGATCGT TTCCGTTAAA
  K
  GCCTTTCTCA AGGTCACGAC GGTGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss137998144	ENSMUSSNP2289338	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss324139381	CHEV_12_102320667	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs49054725					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101048716 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4995	CpG island 4995	within coordinates
D130020L05Rik	RIKEN cDNA D130020L05 gene	within coordinates
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr387703	regulatory region 387703	within coordinates
Tssr114723	transcription start site region 114723	482 bp upstream
Tssr114724	transcription start site region 114724	1255 bp upstream
Tssr114725	transcription start site region 114725	1299 bp upstream
Tssr114726	transcription start site region 114726	1349 bp upstream
Tssr117352	transcription start site region 117352	992 bp downstream
Tssr117353	transcription start site region 117353	1118 bp downstream
Tssr117354	transcription start site region 117354	1196 bp downstream